IL_1VX6_065

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUGAAG*UGGAA

Length

13 nucleotides

Bulged bases

1VX6|1|A|U|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65553.12

Basepair signature

cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

1VX6|1|A|U|1536
1VX6|1|A|G|1537
1VX6|1|A|U|1538
1VX6|1|A|U|1539
1VX6|1|A|G|1540
1VX6|1|A|A|1541
1VX6|1|A|A|1542
1VX6|1|A|G|1543
*
1VX6|1|A|U|1563
1VX6|1|A|G|1564
1VX6|1|A|G|1565
1VX6|1|A|A|1566
1VX6|1|A|A|1567

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA