IL_1VX6_108

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAAUGACG*CUACUGUG

Length

18 nucleotides

Bulged bases

1VX6|1|A|A|3116, 1VX6|1|A|C|3123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11268.1

Basepair signature

cWW-L-R-R-R-R-R-L-L-L-L-tWW-cWW

Number of instances in this motif group

1

Unit IDs

1VX6|1|A|C|3115
1VX6|1|A|A|3116
1VX6|1|A|A|3117
1VX6|1|A|A|3118
1VX6|1|A|A|3119
1VX6|1|A|U|3120
1VX6|1|A|G|3121
1VX6|1|A|A|3122
1VX6|1|A|C|3123
1VX6|1|A|G|3124
*
1VX6|1|A|C|3136
1VX6|1|A|U|3137
1VX6|1|A|A|3138
1VX6|1|A|C|3139
1VX6|1|A|U|3140
1VX6|1|A|G|3141
1VX6|1|A|U|3142
1VX6|1|A|G|3143

Current chains

Chain A

28S ribosomal RNA

Nearby chains