IL_1VX6_121

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAC*GAUUAAA

Length

11 nucleotides

Bulged bases

1VX6|1|A|U|3526, 1VX6|1|A|U|3527, 1VX6|1|A|A|3529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13959.8

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

39

Unit IDs

1VX6|1|A|U|3390
1VX6|1|A|G|3391
1VX6|1|A|A|3392
1VX6|1|A|C|3393
*
1VX6|1|A|G|3524
1VX6|1|A|A|3525
1VX6|1|A|U|3526
1VX6|1|A|U|3527
1VX6|1|A|A|3528
1VX6|1|A|A|3529
1VX6|1|A|A|3530

Current chains

Chain A

28S ribosomal RNA

Nearby chains