IL_1VX6_128

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUGCUAAU*AA

Length

11 nucleotides

Bulged bases

1VX6|1|A|U|3555

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX6_128 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.169

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

1VX6|1|A|U|3554
1VX6|1|A|U|3555
1VX6|1|A|U|3567
1VX6|1|A|G|3568
1VX6|1|A|C|3569
1VX6|1|A|U|3570
1VX6|1|A|A|3571
1VX6|1|A|A|3572
1VX6|1|A|U|3573
*
1VX6|1|A|A|3674
1VX6|1|A|A|3675

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA