IL_1VX6_130

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAAUUAUAU*AAAUAAU

Length

16 nucleotides

Bulged bases

1VX6|1|A|A|3584, 1VX6|1|A|A|3590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29058.1

Basepair signature

cWW-L-R-R-R-R-R-L-L-L-L-cWW

Number of instances in this motif group

1

Unit IDs

1VX6|1|A|A|3583
1VX6|1|A|A|3584
1VX6|1|A|A|3585
1VX6|1|A|U|3586
1VX6|1|A|U|3587
1VX6|1|A|A|3588
1VX6|1|A|U|3589
1VX6|1|A|A|3590
1VX6|1|A|U|3591
*
1VX6|1|A|A|3613
1VX6|1|A|A|3614
1VX6|1|A|A|3615
1VX6|1|A|U|3616
1VX6|1|A|A|3617
1VX6|1|A|A|3618
1VX6|1|A|U|3619

Current chains

Chain A

28S ribosomal RNA

Nearby chains