IL_1VX6_150

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUG*CUUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX6_150 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3652

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

1VX6|1|A|G|130
1VX6|1|A|U|131
1VX6|1|A|U|132
1VX6|1|A|U|133
1VX6|1|A|G|134
*
1VX6|1|A|C|143
1VX6|1|A|U|144
1VX6|1|A|U|145
1VX6|1|A|U|146
1VX6|1|A|C|147

Current chains

Chain A

28S ribosomal RNA

Nearby chains