IL_1VX6_155

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUCA*UGUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX6_155 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.306

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

1VX6|1|A|A|1907
1VX6|1|A|U|1908
1VX6|1|A|U|1909
1VX6|1|A|C|1910
1VX6|1|A|A|1911
*
1VX6|1|A|U|1958
1VX6|1|A|G|1959
1VX6|1|A|U|1960
1VX6|1|A|U|1961
1VX6|1|A|U|1962

Current chains

Chain A

28S ribosomal RNA

Nearby chains