IL_1VY4_029
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 1VY4|1|AA|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY4_029 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.0834
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
1VY4|1|AA|G|662
1VY4|1|AA|A|663
1VY4|1|AA|G|664
1VY4|1|AA|A|665
1VY4|1|AA|G|666
*
1VY4|1|AA|U|740
1VY4|1|AA|G|741
1VY4|1|AA|G|742
1VY4|1|AA|U|743
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AO
- 30S ribosomal protein S15
- Chain AR
- 30S ribosomal protein S18
Coloring options: