IL_1VY4_030
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY4_030 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.0526
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
1VY4|1|AA|G|673
1VY4|1|AA|G|674
1VY4|1|AA|A|675
1VY4|1|AA|A|676
1VY4|1|AA|U|677
1VY4|1|AA|U|678
*
1VY4|1|AA|A|712
1VY4|1|AA|G|713
1VY4|1|AA|G|714
1VY4|1|AA|A|715
1VY4|1|AA|A|716
1VY4|1|AA|C|717
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AK
- 30S ribosomal protein S11
- Chain AR
- 30S ribosomal protein S18
- Chain BD
- 50S ribosomal protein L2
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