3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
1VY4|1|AA|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VY4_037 not in the Motif Atlas
Homologous match to IL_5J7L_041
Geometric discrepancy: 0.1339
The information below is about IL_5J7L_041
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

1VY4|1|AA|G|933
1VY4|1|AA|C|934
1VY4|1|AA|A|935
*
1VY4|1|AA|U|1380
1VY4|1|AA|U|1381
1VY4|1|AA|C|1382
1VY4|1|AA|C|1383
1VY4|1|AA|C|1384

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AG
30S ribosomal protein S7
Chain AI
30S ribosomal protein S9
Chain AX
Transfer RNA; tRNA
Chain AY
Transfer RNA; tRNA

Coloring options:


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