IL_1VY4_037
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 1VY4|1|AA|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY4_037 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.1339
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
1VY4|1|AA|G|933
1VY4|1|AA|C|934
1VY4|1|AA|A|935
*
1VY4|1|AA|U|1380
1VY4|1|AA|U|1381
1VY4|1|AA|C|1382
1VY4|1|AA|C|1383
1VY4|1|AA|C|1384
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AG
- 30S ribosomal protein S7
- Chain AI
- 30S ribosomal protein S9
- Chain AX
- Transfer RNA; tRNA
- Chain AY
- Transfer RNA; tRNA
Coloring options: