Motif IL_47078.3 Version IL_47078.3 of this group appears in releases 3.96 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_037 | 4LFB | 0.0542 | 1 | Minor groove platform | A | SSU rRNA | U | 1380 | U | 1381 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | cWW | cWS | cWW | |
| 2 | IL_5J7L_041 | 5J7L | 0.0000 | 1 | Minor groove platform | AA | SSU rRNA | U | 1380 | U | 1381 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | ncSH | cWW | cWS | cWW |
| 3 | IL_5J7L_043 | 5J7L | 0.5743 | 0 | Minor groove platform | AA | SSU rRNA | G | 993 | A | 994 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |
| 4 | IL_4LFB_039 | 4LFB | 0.5943 | 0 | Minor groove platform | A | SSU rRNA | G | 993 | A | 994 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCC*GCA | 2 |
| GACAU*AC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCC*C | 2 |
| ACA* | 2 |
- Annotations
-
- Minor groove platform (4)
- Basepair signature
- cWW-cWS-L-cWW-L
- Heat map statistics
- Min 0.05 | Avg 0.32 | Max 0.61
Coloring options: