IL_1VY4_052

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

1VY4|1|AA|C|1400, 1VY4|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_052 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0746

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

1VY4|1|AA|C|1399
1VY4|1|AA|C|1400
1VY4|1|AA|G|1401
*
1VY4|1|AA|C|1501
1VY4|1|AA|A|1502
1VY4|1|AA|A|1503
1VY4|1|AA|G|1504

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AV

mRNA

Chain AX

Transfer RNA; tRNA