IL_1VY4_077

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1VY4|1|BA|G|801, 1VY4|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_077 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0426

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

1VY4|1|BA|G|674
1VY4|1|BA|A|675
1VY4|1|BA|A|676
1VY4|1|BA|A|677
1VY4|1|BA|C|678
*
1VY4|1|BA|G|799
1VY4|1|BA|A|800
1VY4|1|BA|G|801
1VY4|1|BA|A|802
1VY4|1|BA|U|803
1VY4|1|BA|A|804
1VY4|1|BA|G|805
1VY4|1|BA|C|806

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BP

50S ribosomal protein L15