Motif IL_17470.6 Version IL_17470.6 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	break		7		8		9		10		11	1-11	2-10	3-9	4-8	6-7
1	IL_5J7L_260	5J7L	0.1327	2	tHW-tHW cross-strand stack	DA	LSU rRNA	G	799	A	800	A	802	U	803	A	804	C	806	*	G	674	A	675	A	676	A	677	C	678	cWW	tWW	tWH	tWH	cWW
2	IL_7RQB_018	7RQB	0.1314	2	tHW-tHW cross-strand stack	1A	LSU rRNA	G	799	A	800	A	802	U	803	A	804	C	806	*	G	674	A	675	A	676	A	677	C	678	cWW	tWW	tWH	tWH	cWW
3	IL_7A0S_015	7A0S	0.0000	2	tHW-tHW cross-strand stack	X	LSU rRNA	G	812	A	813	A	815	U	816	A	817	C	819	*	G	687	A	688	A	689	A	690	C	691	cWW	ntWW		tWH	cWW
4	IL_4WF9_021	4WF9	0.1026	2	tHW-tHW cross-strand stack	X	LSU rRNA	G	844	A	845	A	847	U	848	A	849	C	851	*	G	719	A	720	A	721	A	722	C	723	cWW	ntWW	ntWW	tWH	cWW
5	IL_5TBW_028	5TBW	0.1803	2	tHW-tHW cross-strand stack	1	LSU rRNA	C	931	U	932	G	934	U	935	A	936	C	938	*	G	805	A	806	A	807	A	808	G	809	cWW	ntHH		tWH	cWW
6	IL_8C3A_030	8C3A	0.1857	2	tHW-tHW cross-strand stack (H)	1	LSU rRNA	C	927	U	928	G	930	U	931	A	932	C	934	*	G	801	A	802	A	803	A	804	G	805	cWW			tWH	cWW
7	IL_4V9F_024	4V9F	0.2954	2	tHW-tHW cross-strand stack	0	LSU rRNA	G	892	C	893	A	895	C	896	A	897	C	899	*	G	765	A	766	A	767	U	768	C	769	cWW		tWH	tWH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAGAUAGC*GAAAC	4
CUAGUAGC*GAAAG	2
GCAACAGC*GAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGAUAG*AAA	4
UAGUAG*AAA	2
CAACAG*AAU	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tHW-tHW cross-strand stack (6)
tHW-tHW cross-strand stack (H) (1)
Basepair signature: cWW-tWW-L-R-tWH-L-cWW
Heat map statistics: Min 0.08 | Avg 0.16 | Max 0.30

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Coloring options: Nucleotide numbers

Motif IL_17470.6 Version IL_17470.6 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_17470.6 Version IL_17470.6 of this group appears in releases 3.80 to 3.86

Download

Csv

Json