IL_1VY4_130

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_130 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.0799

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

1VY4|1|BA|G|1856
1VY4|1|BA|G|1857
1VY4|1|BA|G|1858
1VY4|1|BA|A|1859
1VY4|1|BA|G|1860
*
1VY4|1|BA|C|1882
1VY4|1|BA|G|1883
1VY4|1|BA|A|1884
1VY4|1|BA|A|1885
1VY4|1|BA|C|1886

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain B1

50S ribosomal protein L28