IL_56467.8

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_3IGI_002	3IGI	0.4226	Triple sheared	A	Group IIC intron	G	113	G	114	A	115	C	116	G	117	*	C	70	U	71	A	72	A	73	C	74	cWW	tSH		ntHS	cWW
2	IL_4YAZ_006	4YAZ	0.3680	Triple sheared	R	Cyclic di-GMP-I riboswitch	G	35	G	36	G	37	C	38	G	39	*	U	16	A	17	A	18	A	19	C	20	cWW	tSH		ntHS	cWW
3	IL_3MXH_002	3MXH	0.3242	Triple sheared	R	c-di-GMP riboswitch	G	41	G	42	A	43	C	44	G	45	*	C	22	A	23	A	24	A	25	C	26	cWW	tSH		ntHS	cWW
4	IL_3IWN_002	3IWN	0.3248	Triple sheared	A	C-di-GMP riboswitch	G	31	G	32	A	33	C	34	G	35	*	C	12	A	13	A	14	A	15	C	16	cWW	tSH		ntHS	cWW
5	IL_5TBW_067	5TBW	0.2851	Triple sheared	1	LSU rRNA	A	1806	G	1807	G	1808	A	1809	A	1810	*	U	1645	G	1646	A	1647	A	1648	U	1649	cWW	tSH	tSH	tHS	cWW
6	IL_8C3A_073	8C3A	0.2499	Triple sheared	1	LSU rRNA	A	1802	G	1803	G	1804	A	1805	A	1806	*	U	1641	G	1642	A	1643	A	1644	U	1645	cWW	tSH	ntSH	tHS	cWW
7	IL_4WF9_024	4WF9	0.0874	Triple sheared	X	LSU rRNA	U	769	G	770	G	771	A	772	G	773	*	U	748	G	749	A	750	A	751	G	752	cWW	tSH	tSH		cWW
8	IL_8C3A_033	8C3A	0.0897	Triple sheared	1	LSU rRNA	U	851	G	852	G	853	A	854	G	855	*	U	830	G	831	A	832	A	833	G	834	cWW	tSH	tSH	tHS	cWW
9	IL_5TBW_030	5TBW	0.0972	Triple sheared	1	LSU rRNA	U	855	G	856	G	857	A	858	G	859	*	U	834	G	835	A	836	A	837	G	838	cWW	tSH	tSH	tHS	cWW
10	IL_5J7L_263	5J7L	0.0000	Triple sheared	DA	LSU rRNA	U	724	G	725	G	726	A	727	G	728	*	U	703	G	704	A	705	A	706	G	707	cWW	tSH	tSH	tHS	cWW
11	IL_4V9F_027	4V9F	0.0853	Triple sheared	0	LSU rRNA	U	815	G	816	G	817	A	818	A	819	*	U	794	G	795	A	796	A	797	G	798	cWW	tSH	tSH	ntHS	cWW
12	IL_7RQB_021	7RQB	0.0732	Triple sheared	1A	LSU rRNA	U	724	G	725	G	726	A	727	G	728	*	U	703	G	704	A	705	A	706	G	707	cWW	tSH	tSH	tHS	cWW
13	IL_5J7L_310	5J7L	0.2305	Triple sheared	DA	LSU rRNA	U	1736	G	1737	G	1738	A	1739	G	1740	*	U	1720	G	1721	A	1722	G	1723	G	1724	cWW	ntSH	tSH	tHS	cWW
14	IL_2A64_006	2A64	0.3640	Triple sheared	A	ribonuclease P RNA	C	347	G	348	G	349	A	350	G	351	*	C	378	G	379	A	380	A	381	G	382	cWW	tSH	tSH		cWW
15	IL_7A0S_070	7A0S	0.4470	Triple sheared	X	LSU rRNA	U	1848	G	1849	G	1850	A	1851	G	1852	*	C	1865	G	1866	A	1867	A	1868	A	1869	cWW	tSH		ntHS	cWW
16	IL_2A64_005	2A64	0.3418	Triple sheared	A	ribonuclease P RNA	C	297	G	298	G	299	A	300	G	301	*	C	284	G	285	A	286	A	287	G	288	cWW	tSH	ntSH	tHS	cWW
17	IL_8C3A_480	8C3A	0.3838	Triple sheared	CM	SSU rRNA	C	1665	G	1666	G	1667	A	1668	U	1669	*	A	1706	G	1707	A	1708	A	1709	G	1710	cWW	tSH	ntSH	ntWS	cWW
18	IL_4V88_474	4V88	0.3862	Triple sheared	A6	SSU rRNA	A	1678	G	1679	G	1680	A	1681	U	1682	*	A	1719	G	1720	A	1721	A	1722	U	1723	cWW	tSH	tSH		cWW
19	IL_7RQB_075	7RQB	0.3392	Triple sheared	1A	LSU rRNA	G	1856	G	1857	G	1858	A	1859	G	1860	*	C	1882	G	1883	A	1884	A	1885	C	1886	cWW	tSH	tSH	tHS	cWW
20	IL_5J7L_274	5J7L	0.4168	Triple sheared	DA	LSU rRNA	G	875	C	876	A	877	A	878	G	879	*	C	898	A	899	A	900	C	901	C	902	cWW	cWB	ntSH	tHS	cWW
21	IL_4WFL_001	4WFL	0.3714	Triple sheared	A	LSRP RNA	U	72	C	73	G	74	A	75	G	76	*	C	91	G	92	A	93	C	94	A	95	cWW	cWB	tSH	tHS	cWW
22	IL_1U6B_002	1U6B	0.5057	Triple sheared	B	197-MER	G	84	C	85	A	86	A	87	C	88	*	G	56	A	57	A	58	A	59	C	60	cWW	ncWW	tSH	tHS	cWW
23	IL_5TBW_106	5TBW	0.4723	Triple sheared	1	LSU rRNA	U	2835	C	2836	A	2837	A	2838	G	2839	*	C	2849	G	2850	A	2851	C	2852	A	2853	cWW		ntSH	tHS	cWW
24	IL_5J7L_338	5J7L	0.4610	Triple sheared	DA	LSU rRNA	C	2466	C	2467	A	2468	A	2469	G	2470	*	C	2480	G	2481	A	2482	C	2483	G	2484	cWW	cWB	ntSH	tHS	cWW
25	IL_7RQB_095	7RQB	0.4071	Triple sheared	1A	LSU rRNA	C	2466	C	2467	G	2468	A	2469	G	2470	*	C	2480	G	2481	G	2482	C	2483	G	2484	cWW	cWB		tHS	cWW
26	IL_7A0S_087	7A0S	0.4444	Triple sheared	X	LSU rRNA	C	2445	C	2446	G	2447	A	2448	G	2449	*	C	2459	G	2460	G	2461	C	2462	G	2463	cWW	ncWB		tHS	cWW
27	IL_4WF9_093	4WF9	0.4648	Triple sheared	X	LSU rRNA	C	2493	C	2494	A	2495	A	2496	G	2497	*	C	2507	G	2508	A	2509	C	2510	G	2511	cWW	cWB	tSH	ntHS	cWW
28	IL_4V9F_085	4V9F	0.4754	Triple sheared	0	LSU rRNA	G	2501	C	2502	A	2503	A	2504	G	2505	*	C	2515	G	2516	A	2517	C	2518	C	2519	cWW	cWB	ntSH	tHS	cWW
29	IL_5J7L_056	5J7L	0.4368	Triple sheared	AA	SSU rRNA	G	1272	C	1273	A	1274	A	1275	G	1276	*	C	1259	G	1260	A	1261	C	1262	C	1263	cWW	ncWB	tSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGGAG*UGAAG	5
GGACG*CAAAC	2
AGGAA*UGAAU	2
CGGAG*CGAAG	2
CCAAG*CGACG	2
CCGAG*CGGCG	2
GCAAG*CGACC	2
GGACG*CUAAC	1
GGGCG*UAAAC	1
UGGAA*UGAAG	1
UGGAG*UGAGG	1
UGGAG*CGAAA	1
CGGAU*AGAAG	1
AGGAU*AGAAU	1
GGGAG*CGAAC	1
GCAAG*CAACC	1
UCGAG*CGACA	1
GCAAC*GAAAC	1
UCAAG*CGACA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGA*GAA	14
CAA*GAC	5
GAC*AAA	2
CGA*GGC	2
GAC*UAA	1
GGC*AAA	1
GGA*GAG	1
CAA*AAC	1
CGA*GAC	1
CAA*AAA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_56467.8 Version IL_56467.8 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_56467.8 Version IL_56467.8 of this group appears in releases 3.80 to 3.86

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Csv

Json