3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGAG*CGCCGGUGAAAUAC
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VY4_141 not in the Motif Atlas
Homologous match to IL_3U4M_003
Geometric discrepancy: 0.3347
The information below is about IL_3U4M_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_75283.2
Basepair signature
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
Number of instances in this motif group
3

Unit IDs

1VY4|1|BA|G|2124
1VY4|1|BA|G|2125
1VY4|1|BA|A|2126
1VY4|1|BA|G|2127
*
1VY4|1|BA|C|2161
1VY4|1|BA|G|2162
1VY4|1|BA|C|2163
1VY4|1|BA|C|2164
1VY4|1|BA|G|2165
1VY4|1|BA|G|2166
1VY4|1|BA|U|2167
1VY4|1|BA|G|2168
1VY4|1|BA|A|2169
1VY4|1|BA|A|2170
1VY4|1|BA|A|2171
1VY4|1|BA|U|2172
1VY4|1|BA|A|2173
1VY4|1|BA|C|2174

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain AY
Transfer RNA; tRNA

Coloring options:


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