IL_1VY4_141
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAG*CGCCGGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY4_141 not in the Motif Atlas
- Homologous match to IL_3U4M_003
- Geometric discrepancy: 0.3347
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
1VY4|1|BA|G|2124
1VY4|1|BA|G|2125
1VY4|1|BA|A|2126
1VY4|1|BA|G|2127
*
1VY4|1|BA|C|2161
1VY4|1|BA|G|2162
1VY4|1|BA|C|2163
1VY4|1|BA|C|2164
1VY4|1|BA|G|2165
1VY4|1|BA|G|2166
1VY4|1|BA|U|2167
1VY4|1|BA|G|2168
1VY4|1|BA|A|2169
1VY4|1|BA|A|2170
1VY4|1|BA|A|2171
1VY4|1|BA|U|2172
1VY4|1|BA|A|2173
1VY4|1|BA|C|2174
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AY
- Transfer RNA; tRNA
Coloring options: