3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
UUUCC*GGUAG
Length
10 nucleotides
Bulged bases
1VY4|1|BA|U|2689, 1VY4|1|BA|C|2690
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VY4_159 not in the Motif Atlas
Homologous match to IL_7RQB_105
Geometric discrepancy: 0.0474
The information below is about IL_7RQB_105
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_08296.3
Basepair signature
cWW-L-tHS-L-cWW
Number of instances in this motif group
4

Unit IDs

1VY4|1|BA|U|2687
1VY4|1|BA|U|2688
1VY4|1|BA|U|2689
1VY4|1|BA|C|2690
1VY4|1|BA|C|2691
*
1VY4|1|BA|G|2718
1VY4|1|BA|G|2719
1VY4|1|BA|U|2720
1VY4|1|BA|A|2721
1VY4|1|BA|G|2722

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain BE
50S ribosomal protein L3
Chain BR
50S ribosomal protein L17
Chain BT
50S ribosomal protein L19

Coloring options:


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