3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GCAAU*AC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VY4_184 not in the Motif Atlas
Homologous match to IL_5J7L_018
Geometric discrepancy: 0.099
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

1VY4|1|CA|G|371
1VY4|1|CA|C|372
1VY4|1|CA|A|373
1VY4|1|CA|A|374
1VY4|1|CA|U|375
*
1VY4|1|CA|A|389
1VY4|1|CA|C|390

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CP
30S ribosomal protein S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3927 s