IL_1VY4_203

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_203 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0733

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

1VY4|1|CA|G|887
1VY4|1|CA|G|888
1VY4|1|CA|A|889
1VY4|1|CA|G|890
1VY4|1|CA|U|891
1VY4|1|CA|A|892
1VY4|1|CA|C|893
1VY4|1|CA|G|894
*
1VY4|1|CA|U|905
1VY4|1|CA|G|906
1VY4|1|CA|A|907
1VY4|1|CA|A|908
1VY4|1|CA|A|909
1VY4|1|CA|C|910

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17