IL_1VY4_225
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY4_225 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.1914
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
1VY4|1|CA|C|1407
1VY4|1|CA|A|1408
1VY4|1|CA|C|1409
*
1VY4|1|CA|G|1491
1VY4|1|CA|A|1492
1VY4|1|CA|A|1493
1VY4|1|CA|G|1494
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CL
- 30S ribosomal protein S12
- Chain CV
- mRNA
- Chain CW
- Transfer RNA; tRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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