IL_1VY4_230
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGGAG*CAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY4_230 not in the Motif Atlas
- Homologous match to IL_4LFB_064
- Geometric discrepancy: 0.3342
- The information below is about IL_4LFB_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49061.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
1VY4|1|CA|C|1440
1VY4|1|CA|G|1441
1VY4|1|CA|G|1442
1VY4|1|CA|G|1442|||A
1VY4|1|CA|A|1442|||B
1VY4|1|CA|G|1443
*
1VY4|1|CA|C|1459
1VY4|1|CA|A|1460
1VY4|1|CA|G|1461
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CT
- 30S ribosomal protein S20
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DT
- 50S ribosomal protein L19
Coloring options: