IL_1VY4_243

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

1VY4|1|DA|U|504, 1VY4|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_243 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0538

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

1VY4|1|DA|G|481
1VY4|1|DA|A|482
1VY4|1|DA|A|483
1VY4|1|DA|C|484
*
1VY4|1|DA|G|496
1VY4|1|DA|A|497
1VY4|1|DA|G|498
1VY4|1|DA|U|499
1VY4|1|DA|G|500
1VY4|1|DA|A|501
1VY4|1|DA|A|502
1VY4|1|DA|A|503
1VY4|1|DA|U|504
1VY4|1|DA|A|505
1VY4|1|DA|G|506
1VY4|1|DA|A|507
1VY4|1|DA|G|508
1VY4|1|DA|C|509

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24