IL_1VY4_245

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_245 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0704

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

1VY4|1|DA|U|606
1VY4|1|DA|U|607
1VY4|1|DA|A|608
1VY4|1|DA|A|609
1VY4|1|DA|G|610
*
1VY4|1|DA|C|618
1VY4|1|DA|G|619
1VY4|1|DA|G|620
1VY4|1|DA|A|621
1VY4|1|DA|G|622

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15