3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
ACGA*UCUAU
Length
9 nucleotides
Bulged bases
1VY4|1|DA|C|2055, 1VY4|1|DA|C|2612, 1VY4|1|DA|U|2613, 1VY4|1|DA|A|2614
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VY4_304 not in the Motif Atlas
Homologous match to IL_7RQB_079
Geometric discrepancy: 0.0561
The information below is about IL_7RQB_079
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_01206.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

1VY4|1|DA|A|2054
1VY4|1|DA|C|2055
1VY4|1|DA|G|2056
1VY4|1|DA|A|2057
*
1VY4|1|DA|U|2611
1VY4|1|DA|C|2612
1VY4|1|DA|U|2613
1VY4|1|DA|A|2614
1VY4|1|DA|U|2615

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain D5
50S ribosomal protein L32
Chain DE
50S ribosomal protein L3
Chain DW
50S ribosomal protein L22

Coloring options:


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