IL_1VY4_339

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGACAAC*GCUAAUCC

Length

15 nucleotides

Bulged bases

1VY4|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_339 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2366

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

1VY4|1|AA|G|147
1VY4|1|AA|G|148
1VY4|1|AA|A|149
1VY4|1|AA|C|150
1VY4|1|AA|A|151
1VY4|1|AA|A|152
1VY4|1|AA|C|153
*
1VY4|1|AA|G|168
1VY4|1|AA|C|169
1VY4|1|AA|U|170
1VY4|1|AA|A|171
1VY4|1|AA|A|172
1VY4|1|AA|U|173
1VY4|1|AA|C|174
1VY4|1|AA|C|175

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20