IL_1VY4_340

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_340 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.0885

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1VY4|1|AA|G|450
1VY4|1|AA|A|451
1VY4|1|AA|A|452
1VY4|1|AA|A|453
1VY4|1|AA|C|454
1VY4|1|AA|C|455
*
1VY4|1|AA|G|476
1VY4|1|AA|A|477
1VY4|1|AA|C|479
1VY4|1|AA|U|480
1VY4|1|AA|G|481
1VY4|1|AA|A|482
1VY4|1|AA|C|483

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16