IL_1VY5_009

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

1VY5|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_009 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.118

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

1VY5|1|AA|G|148
1VY5|1|AA|A|149
1VY5|1|AA|C|150
1VY5|1|AA|A|151
1VY5|1|AA|A|152
1VY5|1|AA|C|153
*
1VY5|1|AA|G|168
1VY5|1|AA|C|169
1VY5|1|AA|U|170
1VY5|1|AA|A|171
1VY5|1|AA|A|172
1VY5|1|AA|U|173
1VY5|1|AA|C|174

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20