IL_1VY5_023
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY5_023 not in the Motif Atlas
- Homologous match to IL_6CZR_135
- Geometric discrepancy: 0.0839
- The information below is about IL_6CZR_135
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
1VY5|1|AA|U|580
1VY5|1|AA|G|581
1VY5|1|AA|U|582
1VY5|1|AA|A|583
1VY5|1|AA|G|584
*
1VY5|1|AA|U|757
1VY5|1|AA|G|758
1VY5|1|AA|A|759
1VY5|1|AA|G|760
1VY5|1|AA|G|761
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AL
- 30S ribosomal protein S12
- Chain AO
- 30S ribosomal protein S15
- Chain AQ
- 30S ribosomal protein S17
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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