IL_1VY5_046

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_046 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.2709

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

1VY5|1|AA|C|1129
1VY5|1|AA|A|1130
1VY5|1|AA|G|1131
1VY5|1|AA|C|1132
*
1VY5|1|AA|G|1142
1VY5|1|AA|G|1143

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9