IL_1VY5_106

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

1VY5|1|BA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_106 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0476

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

1VY5|1|BA|G|1319
1VY5|1|BA|C|1320
1VY5|1|BA|A|1321
1VY5|1|BA|A|1322
1VY5|1|BA|U|1323
*
1VY5|1|BA|A|1331
1VY5|1|BA|G|1332
1VY5|1|BA|C|1333

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L22

Chain BX

50S ribosomal protein L23