IL_1VY5_107

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

1VY5|1|BA|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_107 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0406

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

1VY5|1|BA|C|1351
1VY5|1|BA|U|1352
1VY5|1|BA|A|1353
1VY5|1|BA|A|1354
1VY5|1|BA|G|1355
*
1VY5|1|BA|C|1376
1VY5|1|BA|G|1377
1VY5|1|BA|A|1378
1VY5|1|BA|A|1379
1VY5|1|BA|G|1380

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2