IL_1VY5_142

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

1VY5|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_142 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.2218

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

1VY5|1|BA|C|2129
1VY5|1|BA|U|2130
1VY5|1|BA|G|2131
1VY5|1|BA|U|2132
1VY5|1|BA|G|2133
1VY5|1|BA|A|2134
1VY5|1|BA|A|2135
1VY5|1|BA|C|2136
*
1VY5|1|BA|G|2155
1VY5|1|BA|G|2156
1VY5|1|BA|G|2157
1VY5|1|BA|A|2158
1VY5|1|BA|G|2159

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains