IL_1VY5_156

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

1VY5|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_156 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0488

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1VY5|1|BA|U|2636
1VY5|1|BA|U|2637
1VY5|1|BA|G|2638
1VY5|1|BA|A|2639
1VY5|1|BA|G|2640
*
1VY5|1|BA|C|2774
1VY5|1|BA|A|2775
1VY5|1|BA|A|2776
1VY5|1|BA|G|2777
1VY5|1|BA|A|2778
1VY5|1|BA|U|2779
1VY5|1|BA|G|2780
1VY5|1|BA|A|2781
1VY5|1|BA|G|2782

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L13