IL_1VY5_180

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

1VY5|1|CA|U|244, 1VY5|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_180 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0767

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

1VY5|1|CA|C|242
1VY5|1|CA|A|243
1VY5|1|CA|U|244
1VY5|1|CA|C|245
1VY5|1|CA|A|246
1VY5|1|CA|G|247
*
1VY5|1|CA|C|277
1VY5|1|CA|G|278
1VY5|1|CA|A|279
1VY5|1|CA|C|280
1VY5|1|CA|G|281
1VY5|1|CA|A|282
1VY5|1|CA|C|283
1VY5|1|CA|G|284

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17