IL_1VY5_206

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

1VY5|1|CA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_206 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1353

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1VY5|1|CA|G|933
1VY5|1|CA|C|934
1VY5|1|CA|A|935
*
1VY5|1|CA|U|1380
1VY5|1|CA|U|1381
1VY5|1|CA|C|1382
1VY5|1|CA|C|1383
1VY5|1|CA|C|1384

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CX

Transfer RNA; tRNA

Chain CY

Transfer RNA; tRNA