IL_1VY5_217
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY5_217 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.1407
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VY5|1|CA|U|1247
1VY5|1|CA|A|1248
1VY5|1|CA|C|1249
1VY5|1|CA|A|1250
1VY5|1|CA|A|1251
1VY5|1|CA|A|1252
1VY5|1|CA|G|1253
*
1VY5|1|CA|C|1284
1VY5|1|CA|A|1285
1VY5|1|CA|A|1286
1VY5|1|CA|A|1287
1VY5|1|CA|A|1288
1VY5|1|CA|A|1289
1VY5|1|CA|G|1290
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CG
- 30S ribosomal protein S7
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CN
- 30S ribosomal protein S14 type Z
- Chain CU
- 30S ribosomal protein Thx
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