IL_1VY5_243

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

1VY5|1|DA|U|504, 1VY5|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_243 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0454

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

1VY5|1|DA|G|481
1VY5|1|DA|A|482
1VY5|1|DA|A|483
1VY5|1|DA|C|484
*
1VY5|1|DA|G|496
1VY5|1|DA|A|497
1VY5|1|DA|G|498
1VY5|1|DA|U|499
1VY5|1|DA|G|500
1VY5|1|DA|A|501
1VY5|1|DA|A|502
1VY5|1|DA|A|503
1VY5|1|DA|U|504
1VY5|1|DA|A|505
1VY5|1|DA|G|506
1VY5|1|DA|A|507
1VY5|1|DA|G|508
1VY5|1|DA|C|509

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24