IL_1VY5_288

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

1VY5|1|DA|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_288 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0849

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

1VY5|1|DA|G|1526
1VY5|1|DA|G|1527
1VY5|1|DA|A|1528
1VY5|1|DA|A|1528|||A
1VY5|1|DA|G|1529
*
1VY5|1|DA|U|1540
1VY5|1|DA|G|1541
1VY5|1|DA|A|1542
1VY5|1|DA|C|1543
1VY5|1|DA|A|1544
1VY5|1|DA|A|1545
1VY5|1|DA|C|1546

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains