IL_1VY5_310

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_310 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3651

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

1VY5|1|DA|G|2110
1VY5|1|DA|C|2111
1VY5|1|DA|G|2112
1VY5|1|DA|U|2113
1VY5|1|DA|A|2114
1VY5|1|DA|G|2115
1VY5|1|DA|G|2116
1VY5|1|DA|A|2117
1VY5|1|DA|U|2118
1VY5|1|DA|A|2119
1VY5|1|DA|G|2120
*
1VY5|1|DA|C|2178
1VY5|1|DA|C|2179

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CY

Transfer RNA; tRNA