IL_1VY5_334

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_334 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0772

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

1VY5|1|DA|U|2847
1VY5|1|DA|G|2848
1VY5|1|DA|U|2849
1VY5|1|DA|A|2850
1VY5|1|DA|A|2851
1VY5|1|DA|G|2852
*
1VY5|1|DA|U|2865
1VY5|1|DA|U|2866
1VY5|1|DA|G|2867
1VY5|1|DA|A|2868
1VY5|1|DA|G|2869

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DT

50S ribosomal protein L19