IL_1VY5_349

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

1VY5|1|DA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY5_349 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1056

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1VY5|1|DA|C|844
1VY5|1|DA|G|845
1VY5|1|DA|C|846
1VY5|1|DA|U|847
1VY5|1|DA|G|848
1VY5|1|DA|A|849
1VY5|1|DA|C|850
*
1VY5|1|DA|G|927
1VY5|1|DA|G|928
1VY5|1|DA|U|930
1VY5|1|DA|G|931
1VY5|1|DA|G|932
1VY5|1|DA|A|933
1VY5|1|DA|G|934

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L15

Chain D3

50S ribosomal protein L30