IL_1VY6_026
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY6_026 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.2539
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04211.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
1VY6|1|AA|U|605
1VY6|1|AA|G|606
1VY6|1|AA|A|607
1VY6|1|AA|A|608
1VY6|1|AA|A|609
1VY6|1|AA|G|610
1VY6|1|AA|A|611
1VY6|1|AA|C|612
*
1VY6|1|AA|G|628
1VY6|1|AA|G|629
1VY6|1|AA|G|630
1VY6|1|AA|G|631
1VY6|1|AA|A|632
1VY6|1|AA|G|633
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AD
- 30S ribosomal protein S4
- Chain AH
- 30S ribosomal protein S8
- Chain AP
- 30S ribosomal protein S16
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