IL_1VY6_157

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY6_157 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.068

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1VY6|1|BA|C|2652
1VY6|1|BA|U|2653
1VY6|1|BA|A|2654
1VY6|1|BA|G|2655
1VY6|1|BA|U|2656
1VY6|1|BA|A|2657
1VY6|1|BA|C|2658
*
1VY6|1|BA|G|2663
1VY6|1|BA|G|2664
1VY6|1|BA|A|2665
1VY6|1|BA|C|2666
1VY6|1|BA|C|2667
1VY6|1|BA|G|2668

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6