IL_1VY6_220

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY6_220 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1032

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1VY6|1|CA|C|1303
1VY6|1|CA|G|1304
1VY6|1|CA|G|1305
1VY6|1|CA|A|1306
1VY6|1|CA|U|1307
1VY6|1|CA|U|1308
*
1VY6|1|CA|A|1329
1VY6|1|CA|U|1330
1VY6|1|CA|G|1331
1VY6|1|CA|A|1332
1VY6|1|CA|A|1333
1VY6|1|CA|G|1334

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CU

30S ribosomal protein Thx