IL_1VY6_263
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 1VY6|1|DA|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY6_263 not in the Motif Atlas
- Homologous match to IL_7A0S_033
- Geometric discrepancy: 0.1103
- The information below is about IL_7A0S_033
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
1VY6|1|DA|C|998
1VY6|1|DA|U|999
1VY6|1|DA|A|1000
1VY6|1|DA|A|1001
1VY6|1|DA|G|1002
*
1VY6|1|DA|C|1153
1VY6|1|DA|G|1154
1VY6|1|DA|A|1155
1VY6|1|DA|A|1156
1VY6|1|DA|G|1157
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D3
- 50S ribosomal protein L30
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DU
- 50S ribosomal protein L20
- Chain DV
- 50S ribosomal protein L21
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