IL_1VY6_279

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY6_279 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.1267

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

1VY6|1|DA|C|1417
1VY6|1|DA|G|1418
1VY6|1|DA|A|1419
1VY6|1|DA|U|1420
1VY6|1|DA|G|1421
*
1VY6|1|DA|C|1577
1VY6|1|DA|U|1578
1VY6|1|DA|A|1579
1VY6|1|DA|A|1580
1VY6|1|DA|G|1581

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains