IL_1VY6_291

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

1VY6|1|DA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY6_291 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.092

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

1VY6|1|DA|A|1669
1VY6|1|DA|C|1670
1VY6|1|DA|U|1671
1VY6|1|DA|C|1672
1VY6|1|DA|U|1673
1VY6|1|DA|G|1674
*
1VY6|1|DA|C|1990
1VY6|1|DA|U|1991
1VY6|1|DA|G|1992
1VY6|1|DA|U|1993

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DO

50S ribosomal protein L14