IL_1VY6_320

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY6_320 not in the Motif Atlas

Homologous match to IL_7RQB_096

Geometric discrepancy: 0.0947

The information below is about IL_7RQB_096

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_76223.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

1VY6|1|DA|C|2507
1VY6|1|DA|G|2508
*
1VY6|1|DA|U|2580
1VY6|1|DA|G|2581
1VY6|1|DA|G|2582

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CW

Cytidine-Puromycin

Chain D5

50S ribosomal protein L32

Chain DE

50S ribosomal protein L3