IL_1VY6_325
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 1VY6|1|DA|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY6_325 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.0674
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
1VY6|1|DA|U|2636
1VY6|1|DA|U|2637
1VY6|1|DA|G|2638
1VY6|1|DA|A|2639
1VY6|1|DA|G|2640
*
1VY6|1|DA|C|2774
1VY6|1|DA|A|2775
1VY6|1|DA|A|2776
1VY6|1|DA|G|2777
1VY6|1|DA|A|2778
1VY6|1|DA|U|2779
1VY6|1|DA|G|2780
1VY6|1|DA|A|2781
1VY6|1|DA|G|2782
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain DE
- 50S ribosomal protein L3
- Chain DN
- 50S ribosomal protein L13
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